Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LUAD | rs72648867 | chr17:45813582 | G/A | 1.6E-6 | 503 | 21.75 | 23.02 | 3.97 | KM Plot |
| LUAD | rs72648868 | chr17:45813896 | C/T | 1.6E-6 | 503 | 21.75 | 23.02 | 3.97 | KM Plot |
| LUAD | rs72648869 | chr17:45813899 | G/A | 1.6E-6 | 503 | 21.75 | 23.02 | 3.97 | KM Plot |
| LUAD | rs72784536 | chr10:45747167 | A/G | 3.1E-7 | 493 | 22.13 | 22.57 | 10.95 | KM Plot |
| LUAD | rs72784538 | chr10:45749559 | A/G | 3.1E-7 | 493 | 22.13 | 22.57 | 10.95 | KM Plot |
| LUAD | rs72994347 | chr2:132275758 | C/T | 2.47E-6 | 504 | 21.73 | 23.75 | 11.87 | KM Plot |
| LUAD | rs73058052 | chr19:50099422 | C/T | 1.21E-5 | 484 | 21.82 | 23.5 | 14.8 | KM Plot |
| LUAD | rs73163167 | chr7:98943086 | C/T | 1.37E-6 | 503 | 21.07 | 26.13 | 9.7 | KM Plot |
| LUAD | rs73174526 | chr2:10969640 | G/A | 4.41E-9 | 497 | 20.8 | 33.23 | 2.7 | KM Plot |
| LUAD | rs73324308 | chr17:47405338 | T/G | 3.35E-11 | 501 | 21.82 | 21.93 | 4.55 | KM Plot |
| LUAD | rs73324323 | chr17:47420054 | G/T | 3.01E-11 | 502 | 21.77 | 21.7 | 4.55 | KM Plot |
| LUAD | rs73324348 | chr17:47455752 | G/A | 3.71E-11 | 496 | 21.73 | 22.97 | 4.55 | KM Plot |
| LUAD | rs73340392 | chr17:47358308 | G/A | 4.77E-11 | 498 | 21.88 | 22.13 | 4.55 | KM Plot |
| LUAD | rs73340399 | chr17:47372743 | G/C | 3.03E-11 | 502 | 21.82 | 21.82 | 4.55 | KM Plot |
| LUAD | rs740160 | chr7:98957880 | C/T | 2.13E-6 | 502 | 21 | 26.13 | 9.7 | KM Plot |